| Residues placed | 6MSM 1181; 5UAK 1139; 8EIQ 1162; 8EJ1 1127 | The four .cif.gz files from the RCSB Protein Data Bank, chain A, model 1. | Count the ATOM lines whose atom name is CA in chain A, model 1. |
| Method, resolution, date | 6MSM 3.2 Å, deposited 2018-10-16; 5UAK 3.87 Å, deposited 2016-12-19; 8EIQ 3 Å, deposited 2022-09-15; 8EJ1 6.9 Å, deposited 2022-09-16 | Fields _exptl.method, _em_3d_reconstruction.resolution and _pdbx_database_status.recvd_initial_deposition_date in each file. | Open the file header and read those fields. |
| Paper | 6MSM Proc. Natl. Acad. Sci. U.S.A. 2018, PubMed 30459277; 5UAK Cell 2017, PubMed 28340353; 8EIQ Science 2022, PubMed 36264792; 8EJ1 Science 2022, PubMed 36264792 | Fields _citation.journal_abbrev, _citation.year and _citation.pdbx_database_id_PubMed. | Open the PubMed record. |
| Stretches not placed | listed in the table above | Computed from the residue numbers placed. | List the residue numbers that have a CA atom and take the gaps between 1 and 1480. |
| How each file differs from UniProt’s sequence | 6MSM 1371; 5UAK none; 8EIQ 508, 1371; 8EJ1 508, 1371 | The file’s own _struct_ref_seq_dif list; expression-tag residues beyond the protein are counted, not drawn. | Read that list in the file. |
| Length and part boundaries | 1,480 residues; parts 81 to 365, 423 to 646, 859 to 1155, 1210 to 1443; a region UniProt marks as disordered (the regulatory, or R, region) 654 to 831 | UniProt P13569, entry version 286, annotation updated 2026-09-02: the sequence, and the features of type Domain and Region. | Open the entry on uniprot.org. |
| Residue numbering | 4,609 placed residues checked; 3 differ from UniProt, all declared by their files | Every placed residue is compared with the amino acid UniProt has at that number; the build stops if one disagrees without its file saying so. | Run tools/cftr-model/build_traces.py (in the cf-research repository) with the downloaded files; tools/cftr-model/tests/test_data.py also checks it. |
| Distance after fitting | 6MSM the reference; 5UAK 5.01 Å over 557 residues; 8EIQ 0.84 Å over 566 residues; 8EJ1 4.87 Å over 547 residues | Computed for this page. Take the alpha carbons that 6MSM and the structure both place, with the same amino acid, inside UniProt residues 81 to 365 and 859 to 1155; fit one onto the other by a rigid rotation and shift (Horn’s method); the number is the root-mean-square distance left. | Run tools/cftr-model/build_traces.py (in the cf-research repository); tools/cftr-model/tests/test_data.py shows the fit recovers a known rotation. |
| Positions in the view | angstrom, rounded to 0.1 | The alpha-carbon coordinates after that fit, centered on the placed residues of 6MSM. | Save the CSV from the tools above. |
| Topology and helices | 12 transmembrane segments; 13 topological domains | UniProt P13569 features of type Transmembrane and Topological domain. | Open the entry on uniprot.org. |
| Variant positions | 209 entries: 196 at a single residue (165 different positions) and 13 spanning several residues | UniProt P13569 features of type Natural variant (position, residues and wording as UniProt gives them). Only single-residue entries are drawn as beads; the others are listed in the residue look-up. | Open the entry on uniprot.org. |